Category Archives: biology

Treatment with interferon-a2b speeds recovery of covid-19

As reported in my blog here from Frontiers in Immunology:

“Treatment with antivirals such as interferons may significantly improve virus clearance and reduce levels of inflammatory proteins in COVID-19 patients, according to a new study in Frontiers in Immunology. Researchers conducting an exploratory study on a cohort of confirmed COVID-19 cases in Wuhan found that treatment with interferon (IFN)-α2b significantly reduced the duration of detectable virus in the upper respiratory tract and reduced blood levels of interleukin(IL)-6 and C-reactive protein (CRP), two inflammatory proteins found in the human body. The findings show potential for the development of an effective antiviral intervention for COVID-19.”

2020-06-06 Check-in topics

Here are some of the topic references Scott, Paul, Edward, and Mark discussed during today’s check-in. If these provoke any thoughts, please feel free to reply by comment below this article or by reply to all from the associated email message from Cogniphile.

Socio-economic and political:

  • Alternate social and economic system –
  • Dark Horse podcast (Weinstein) ep. 19 on co-presidency idea
  • How could a shift to voting on issues rather than representatives work? What are the potential challenges? How could it be better? (There’s not a lot of easily discoverable analysis on this.)
  • Perspective: Despite our challenges and structural societal issues, most people in the U.S. enjoy more security—i.e., most Americans don’t need to worry about being violently attacked or starving to death. I think we agreed on this general point. It in no way lessens the obvious needs for systemic improvements.

    I add an after note, however, that a succession of unfortunate events, especially if medical issues and their crippling expenses are involved, can quickly deplete the average American’s finances and put them on the streets. A homeless person’s capacity to be resourceful literally includes their ability to carry and protect resources which become much more difficult to retain due to space in a car (or backpack) and increased exposure to crime. Social stigma becomes self-reinforcing to the homeless person and we who encounter them. Nearly all doors close. ‘Structural invisibility’ results—’society’ just stops seeing them (or can only see them as choosing or deserving their situations) and predators take society’s disregard as open season on the homeless.

    So, while it is true the threshold of personal disaster is farther from the average American than from the average, say, Zimbabwean or Eritrean, once an American crosses that threshold it can certainly be a devastating and nearly intractable circumstance. There are many trap doors leading down and few ladders leading back up. Thoughts?

Entertainment we’ve enjoyed recently:

  • Edward: Killing Eve – Bored British intelligence agent, Eve, is overly interested in female assassins, their psychologies and their methods of killing. She is recruited by a secret division within MI6 chasing an international assassin who calls herself Villanelle. Eve crosses paths with Villanelle and discovers that members within both of their secret circles may be more interconnected than she is comfortable with. Both women begin to focus less on their initial missions in order to desperately learn more about the other.
  • Mark: Devs (FX network sci-fi thriller series) – Atmospherically dark and brooding exploration of the implications of a quantum computing system capable of peering into past and future. Also a meditation on two competing physics theories, deterministic and indeterministic (Copenhagen interpretation – aka, ‘many worlds,’ ‘multiple universes’). From a genre perspective, it is a thriller.
  • Scott: After Life (Ricky Gervais) – follows Tony, whose life is turned upside down after his wife dies from breast cancer. He contemplates suicide, but instead decides to live long enough to punish the world for his wife’s death by saying and doing whatever he wants.
  • Paul: Exhalation (book of short sci-fi stories) Ted Chiang

    Mark would like to base a few future discussions on the following stories:
    • The Lifecycle of Software Objects “follows Ana Alvarado over a twenty-year period, during which she “raises” an artificial intelligence from being essentially a digital pet to a human-equivalent mind.”
    • The Truth of Fact, the Truth of Feeling – A study in memory and meaning told from interwoven future and past stories. “a journalist observes how the world, his daughter, and he himself are affected by ‘Remem’, a form of lifelogging whose advanced search algorithms effectively grant its users eidetic memory of everything that ever happened to them, and the ability to perfectly and objectively share those memories. In a parallel narrative strand, a Tiv [African tribal] man is one of the first of his people to learn to read and write, and discovers that this may not be compatible with oral tradition.” (Wikipedia)
    • The Great Silence – Mutimedia collaboration version here. An earthbound alien wonders about humanity’s fascination with missing space aliens and lack of interest of intelligences among us.
    • Omphalos – On an Earth on which science has long-since proven the planet is precisely as old as the bible states, an anthropologist following the trail of a fake artifact stumbles onto a shattering discovery.
    • Anxiety is the Dizziness of Freedom (title is a Kirkegaard quote) – “the ability to glimpse into alternate universes necessitates a radically new examination of the concepts of choice and free will.” (SFWA)

  • Scott: Who are some of your favorite fiction authors?


Darwinian domain-generality

Subtitle: The role of evolutionary psychology in the modularity debate. MA thesis (2017) by Michael Lundie, Georgia State University. The abstract:

“Evolutionary Psychology (EP) tends to be associated with a Massively Modular (MM) cognitive architecture. I argue that EP favors a non-MM cognitive architecture. The main point of dispute is whether central cognition, such as abstract reasoning, exhibits domain-general properties. Partisans of EP argue that domain-specific modules govern central cognition, for it is unclear how the cognitive mind could have evolved domain-generality. In response, I defend a distinction between exogenous and endogenous selection pressures, according to which exogenous pressures tend to select for domain-specificity, whereas the latter, endogenous pressures, select in favor of domain-generality. I draw on models from brain network theory to motivate this distinction, and also to establish that a domain-general, non-MM cognitive architecture is the more parsimonious adaptive solution to endogenous pressures.”

COVID-19 (Average) vs Other Causes of Death (Actual) in the U.S. – Animated Data Graph

Source: Covid vs. US Daily Average Cause of Death, Robert Martin on 8 Apr 2020

For those still saying influenza is a much bigger killer than COVID-19 (SARS-COV-2), the numbers don’t support that argument, especially considering there are many deaths that strongly appear to be due to COVID-19 that are not reported as such because the deceased are not tested. The animation conveys the speed with which an exponentially increasing infection rate overtakes other, relatively linear rates of expansion.

A war broke out in heaven

See Zak Stein’s reflections on how the pandemic signals the end of an era and the beginning of a new one. This could be an opportunity to transform our dominant cultural worldview if we but accept the responsibility and get busy enacting it. Just a brief excerpt follows. Click on the link and be rewarded with the rest of this inspiring scripture.

“One world is now gone and a new one has yet to emerge; we are now at the beginning of the beginning. We are living in the liminal: a time of pure potential and change, a time between worlds. This is it: we have arrived at the end of the world. Finally. Now we can start to build a new one.”

Frontiers response to coronavirus

See this link.  Their introductory blurb follows:

The Frontiers Coronavirus Knowledge Hub provides an up-to-date source of trusted information and analysis on COVID-19 and coronaviruses, including the latest research articles, information, and commentary from our world-class scientific community.

Frontiers has also waived Article Processing Charges (APCs) and established a priority peer-review process for manuscripts submitted in response to the COVID-19 pandemic. This will further help ensure robust scientific research becomes openly available as soon as possible, for other researchers to build on and to enable evidence-based and factual decision-making for public authorities worldwide.

As we pull together as a community – calmly, responsibly, and resolutely – during the COVID-19 outbreak, we are keen to hear from you. Please do not hesitate to send your ideas for new research directions, stakeholder engagement and initiatives around coronavirus and the current global health crisis.

The Political Mind

By George Lakoff.  A copy can be found at here. An excerpt:

“One can see in scripts the link between frames and narratives.
Narratives are frames that tell a story. They have semantic roles,
properties of the role, relations among roles, and scenarios. What
makes it a narrative-a story-and not just a mere frame? A narrative
has a point to it, a moral. It is about how you should live
your life-or how you shouldn’t. It has emotional content: events
that make you sad or angry or in awe” (250).

The Cognitive Bias Codex

Many (all?) cognitive biases are built-in features of the human attention-sensation-perception-memory-cognition chain of sense making processes. It would not be surprising to learn many of these biases have effects that are relevant to questions regarding how natural selection shaped humans for particular embodied functions in a particular environment. Much has been said and written about how the pre-modern environment evolution calibrated us to function within is in many respects quite different from our modern environment.

Living in the future’s past

I watched a good documentary last night titled, Living in the Future’s Past, a project organized, produced, and narrated by Jeff Bridges. It’s available through your Albuquerque Public Library account’s access to Hoopla Digital, Amazon Prime video, and other services. It lays out the modern dilemma of having a pre-neolithic brain in a Neolithic era and posits several questions that align closely with the theme of our current discussion . The film has commentary from diverse scientific experts, including Daniel Goldman (emotional and social intelligence and mindfulness). The upshot is a recurring suggestion our current brain functionality is capable of reframing our perspective and modulating our perceptions and behaviors around carefully constructed focal questions that get at what sort of future(s) we desire. I like this approach—so well in fact that I Had reserved some web domains months ago:,,, and These domains are not active yet. They will relate to the novel I’m writing and to a related non-fiction project. Edward is onto an important approach in looking to semantics (framing, etc.).

Also, on a short-term level, cultural evolution (including language and semantics) appears much more potent a driver than physiological evolution. Given that, I recently purchased a book by an author who goes into great depth on cultural evolution. The book is Cognitive Gadgets: The Cultural Evolution of Thinking, by Cecelia Heyes. I may put it forward for a future discussion.

Humans are still evolving

From this article. See it for details.

“Evolution is an ongoing process, although many don’t realize people are still evolving. It’s true that Homo sapiens look very different than Australopithecus afarensis, an early hominin that lived around 2.9 million years ago. But it is also true that we are very different compared to members of our same species, Homo sapiens, who lived 10,000 years ago — and we will very likely be different from the humans of the future.

“What we eat, how we use our bodies, and who we choose to have kids with are just some of the many factors that can cause the human body to change. Genetic mutations lead to new traits — and with the world population now above 7 billion and rising, the chances of genetic mutations that natural selection can potentially act on is only increasing. Don’t believe us? Inverse presents three examples of recent changes to the human body.”